The Covid-19 pandemic is developing worldwide with dynamic genetic evolution. 
We here present genomic profiling of 1241 coronavirus samples covering all variants of concern and other abundant variants.<br>
<br>
Original publication is available <a href="https://pubmed.ncbi.nlm.nih.gov/34578345/", target="_blank">here</a>.

Comprehensive analysis of transcriptome data

This package translates microarray expression data into metadata
  of reduced dimension. It provides various sample-centered and group-centered
  visualizations, sample similarity analyses and functional enrichment analyses.
  The underlying SOM algorithm combines feature clustering, multidimensional
  scaling and dimension reduction, along with strong visualization capabilities.
  It enables extraction and description of functional expression modules inherent
  in the data.

fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape, biomaRt,
Biobase, RcppParallel, Rcpp

Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>, Hoang Thanh Le <le@izbi.uni-leipzig.de> and Martin Kalcher <mkalcher@porkbox.net>

GeneExpression, DifferentialExpression, GeneSetEnrichment,
DataRepresentation, Visualization

Routines for simple graphs and network analysis. It can
  handle large graphs very well and provides functions for generating random
  and regular graphs, graph visualization, centrality methods and much more.

graphics, grDevices, magrittr, Matrix, pkgconfig (>= 2.0.0),
stats, utils

ape, digest, graph, igraphdata, rgl, scales, stats4, tcltk,
testthat, withr

gmp (optional), libxml2 (optional), glpk (optional)

'adjacency.R' 'auto.R' 'assortativity.R' 'attributes.R'
'basic.R' 'bipartite.R' 'centrality.R' 'centralization.R'
'cliques.R' 'cocitation.R' 'cohesive.blocks.R' 'community.R'
'components.R' 'console.R' 'conversion.R' 'data_frame.R'
'decomposition.R' 'degseq.R' 'demo.R' 'embedding.R' 'epi.R'
'fit.R' 'flow.R' 'foreign.R' 'games.R' 'glet.R' 'hrg.R'
'igraph-package.R' 'incidence.R' 'indexing.R' 'interface.R'
'iterators.R' 'layout.R' 'layout_drl.R' 'lazyeval.R' 'make.R'
'minimum.spanning.tree.R' 'motifs.R' 'nexus.R' 'operators.R'
'other.R' 'package.R' 'palette.R' 'par.R' 'paths.R' 'plot.R'
'plot.common.R' 'plot.shapes.R' 'pp.R' 'print.R' 'printr.R'
'random_walk.R' 'rewire.R' 'scan.R' 'scg.R' 'sgm.R'
'similarity.R' 'simple.R' 'sir.R' 'socnet.R' 'sparsedf.R'
'structural.properties.R' 'structure.info.R' 'test.R'
'tkplot.R' 'topology.R' 'triangles.R' 'utils.R' 'uuid.R'
'versions.R' 'weakref.R' 'zzz-deprecate.R'